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Frey, S
- Anthony, M. A., Frey, S. D., Stinson, K. A. 2017. Fungal community homogenization,
shift in dominant trophic guild, and appearance of novel taxa with biotic
invasion. Ecosphere 8: 17 pp.
- Anthony, M. A., Knorr, M., Moore, J. A. M., Simpson, M., Frey, S. D. 2021. Fungal community and functional
responses to soil warming are greater than for soil nitrogen
enrichment. Elementa: Science of the
Anthropocene 9: article 000059, 15 pp.
- Anthony, M. A., Stinson, K. A., Moore, J. A. M., Frey, S. D. 2020. Plant invasion impacts on fungal
community structure and function depend on soil warming and nitrogen
enrichment. Oecologia 194: 659–672.
- Anthony, M. A., Stinson, K. A., Trautwig, A. N., Coates-Connor, E., Frey, S. D. 2019. Fungal communities do not
recover after removing invasive Alliaria petiolata (garlic mustard). Biological Invasions 21: 3085-3099.
- Bradford, M. A., Davies, C. A., Frey, S. D., Maddox, T. R., Melillo, J. M., Mohan, J., Reynolds, J. F., Treseder, K. K., Wallenstein, M. D. 2008. Thermal adaptation of soil
microbial respiration to elevated temperature. Ecology Letters 11: 1316-1327.
- Bradford, M. A., Wallenstein, M., Allison, S. D., Treseder, K. K., Frey, S., Watts, S. B., Davies, C. A., Maddox, T. R., Melillo, J. M., Mohan, J., Reynolds, J. F. 2009. Decreased mass specific
respiration under experimental warming is robust to the microbial biomass
method employed. Ecology Letters 12: E15-E18.
- Brzostek, E. R., Blair, J. M., Dukes, J. S., Frey, S. D., Hobbie, S. E., Melillo, J. M., Mitchell, R. J., Pendall, E., Reich, P. B., Shaver, G. R., Stefanski, A., Tjoelker, M. G., Finzi, A. C. 2012. The effect of experimental
warming and precipitation change on proteolytic enzyme activity: positive
feedbacks to nitrogen availability are not universal. Global Change Biology 18: 2617-2625.
- Burton, A. J., Melillo, J. M., Frey, S. D. 2008. Adjustment of Forest Ecosystem
Root Respiration as Temperature Warms. Journal of Integrative Plant
Biology 50: 1462-1483.
- Carey, J. C., Tang, J., Templer, P. H., Kroeger, K. D., Crowther, T. W., Burton, A. J., Dukes, J. S., Emmett, B., Frey, S. D., Heskel, M. A., Jiang, L., Machmuller, M. B., Mohan, J., Panetta, A., Reich, P. B., Reinsch, S., Wang, X., Allison, S. D. , Bamminger, C., Bridgham, S., Collins, S. L., de Dato, G., Eddy, W. C., Enquist, B. J., Estiarte, M., Harte, J., Henderson, A., Johnson, B. R., Steenberg Larsen, K., Luo, Y., Marhan, S., Melillo, J. M., Peñuelas, J., Pfeifer-Meister, L., Poll, C., Rastetter, E., Reinmann, A. B., Reynolds, L. L., Schmidt, I. K., Shaver, G. R., Strong, A. L., Suseela, V., Tietema, A. 2016. Temperature response of soil
respiration largely unaltered with experimental warming. PNAS 113: 13797–13802.
- Conant, R. T., Ryan, M. G., Ågren, G. I., Birge, H. E., Bradford, M. A., Davidson, E. A., Eliasson, P. E., Evans, S. E., Frey, S. D., Giardina, C. P., Hopkins, F., Hyvönen, R., Kirschbaum, M. U. F., Lavallee, J. M., Leifeld, J., Parton, W. J., Steinweg, J. M., Wallenstein, M. D., Wetterstedt, J. A.
M. 2011. Temperature and soil organic
matter decomposition rates – synthesis of current knowledge and a way
forward. Global Change Biology 17: 3392-3404.
- Contosta, A. R., Frey, S. D., Cooper, A. B. 2011. Seasonal dynamics of soil
respiration and nitrogen mineralization in chronically warmed and fertilized
soils. Ecosphere 2: 1-21.
- Contosta, A. R., Frey, S. D., Cooper, A. B. 2015. Soil microbial communities vary
as much over time as with chronic warming and nitrogen additions. Soil Biology and
Biochemistry 88: 19-24.
- Contosta, A. R., Frey, S. D., Ollinger, S. V., Cooper, A. 2013. Soil respiration does not
acclimatize to warmer temperatures when modeled over seasonal
timescales. Biogeochemistry 112: 555-570.
- Craig, M. E., Geyer, K. M., Beidler, K. V., Brzostek, E. R., Frey, Serita D., Stuart Grandy, A., Liang, C., Phillips, R. P. 2022. Fast-decaying plant litter
enhances soil carbon in temperate forests but not through microbial
physiological traits. Nature Communications 13: 1229.
- Crowther, T. W., Thomas, S. M., Maynard, D. S., Baldrian, P., Covey, K., Frey, S. D., van Diepen, L. T. A., Bradford, M. A. 2015. Biotic interactions mediate soil
microbial feedbacks to climate change. PNAS 112: 7033-7038.
- Crowther, T. W., Todd-Brown, K. E. O., Rowe, C. W., Wieder, W. R., Carey, J. C., Machmuller, M. B., Snoek, B. L., Fang, S., Zhou, G., Allison, S. D., Blair, J. M., Bridgham, S. D., Burton, A. J., Carrillo, Y., Reich, P. B., Clark, J. S., Classen, A. T., Dijkstra, F. A., Elberling, B., Emmett, B. A., Estiarte, M., Frey, S. D., Guo, J., Harte, J., Jiang, L., Johnson, B. R., Kröel-Dulay, G., Larsen, K. S., Laudon, H., Lavallee, J. M., Luo, Y., Lupascu, M., Ma, L. N., Marhan, S., Michelsen, A., Mohan, J., Niu, S., Pendall, E., Peñuelas, J., Pfeifer-Meister, L., Poll, C., Reinsch, S., Reynolds, L. L., Schmidt, I. K., Sistla, S., Sokol, N. W., Templer, P. H., Treseder, K. K., Welker, J. M., Bradford, M. A. 2016. Quantifying global soil carbon
losses in response to warming. Nature 540: 104-108.
- DeAngelis, K. M., Pold, G., Topcuonglu, B. D., van Diepen, L. T. A., Varney, R., Blanchard, J., Melillo, J. M., Frey, S. D. 2015. Long-term forest soil warming
alters microbial communities in temperate forest soils. Frontiers in
Microbiology 6: 104.
- DeAngelis, K. M., Priyanka, R. C., Pold, G., Romero Olivares, A., Frey, S. D. 2019. Microbial responses to
experimental soil warming: Five testable hypotheses. In: Mohan, J. E., Ecosystem Consequences of Soil
Warming, Academic Press, Cambridge.
- Domeignoz-Horta, L.
A., Pold, G., Erb, H., Sebag, D., Verrecchia, E., Northen, T., Louie, K., Eloe-Fadrosh, E., Pennacchio, C., Knorr, M. A., Frey, S. D., Melillo, J. M., DeAngelis, K. M. 2022. Substrate availability and not
thermal acclimation controls microbial temperature sensitivity response to
long-term warming. Global Change Biology 29: 1574 - 1590.
- Domeignoz-Horta, L.
A., Pold, G., Liu, X. A., Frey, S. D., Melillo, J. M., DeAngelis, K. M. 2020. Microbial diversity drives
carbon use efficiency in a model soil. Nature Communications 11: article 3684, 10 pp.
- Finzi, A. C., Ausin, A. T., Cleland, E. E., Frey, S. D., Houlton, B. Z., Wallenstein, M. D. 2011. Responses and feedbacks of
coupled biogeochemical cycles to climate change: examples from terrestrial
ecosystems. Frontiers in Ecology and the
Environment 9: 61-67.
- Finzi, A. C., Giasson, M.-A., Barker Plotkin, A., Aber, J. D., Boose, E. R., Davidson, E. A., Dietze, M. C., Ellison, A. M., Frey, S. D., Goldman, E., Keenan, T. F., Melillo, J. M., Munger, J. W., Nadelhoffer, K. J., Ollinger, S. V., Orwig, D. A., Pederson, N., Richardson, A. D., Savage, K., Tang, J., Thompson, J. R., Williams, C. A., Wofsy, S. C., Zhou, Z., Foster, D. R. 2020. Carbon budget of the Harvard
Forest Long-Term Ecological Research site: pattern, process, and response to
global change. Ecological Monographs 90: e01423, 37 pp.
- Frey, S. D. 2006. Forest ecosystem responses to
chronic nitrogen additions. Teaching Issues and Experiments
in Ecology 4: 1-14.
- Frey, S. D. 2019. Mycorrhizal Fungi as Mediators
of Soil Organic Matter Dynamics. Annual Review of Ecology,
Evolution, and Systematics 50: 237-259.
- Frey, S. D., Drijber, R., Smith, H., Melillo, J. 2008. Microbial biomass, functional
capacity, and community composition after twelve years of soil
warming. Soil Biology and
Biochemistry 40: 2904-2907.
- Frey, S. D., Knorr, M., Parrent, J. L., Simpson, R. T. 2004. Chronic nitrogen enrichment
affects the structure and function of the soil microbial community in
temperate hardwood and pine forests. Forest Ecology and
Management 196: 159-171.
- Frey, S. D., Lee, J., Melillo, J. M., Six, J. W. 2013. The temperature response of soil
microbial efficiency and its feedback to climate. Nature Climate Change 3: 395-398.
- Frey, S. D., Ollinger, S. V., Nadelhoffer, K. J., Bowden, R. D., Brzostek, E. R., Burton, A. J., Caldwell, B. A., Crow, S., Goodale, C. G., Grandy, A. S., Finzi, A. C., Kramer, M. G., Lajtha, K., LeMoine, J., Martin, M., McDowell, W. H., Minocha, R., Sadowsky, J. J., Templer, P. H., Wickings, K. 2014. Chronic nitrogen additions
suppress decomposition and sequester soil carbon in temperate
forests. Biogeochemistry 121: 305-316.
- Geyer, K. M., Schnecker, J., Grandy, A. S., Richter, A., Frey, S. D. 2020. Assessing microbial residues in
soil as a potential carbon sink and moderator of carbon use
efficiency. Biogeochemistry 151: 237–249.
- Giasson, M.-A., Ellison, A. M., Bowden, R. D., Crill, P. M., Davidson, E. A., Drake, J. E., Frey, S. D., Hadley, J. L., Lavine, M., Melillo, J. M., Munger, J. W., Nadelhoffer, K. J., Nicoll, L., Ollinger, S. V., Savage, K., Steudler, P. A., Tang, J., Varner, R. K., Wofsy, S. C., Foster, D. R., Finzi, A. C. 2013. Soil respiration in a
northeastern US temperate forest: a 22-year synthesis. Ecosphere 4: article 140.
- Gilliam, F. S., Burns, D. A., Driscoll, C. T., Frey, S. D., Lovett, G. M., Watmough, S. A. 2019. Decreased atmospheric nitrogen
deposition in eastern North America: Predicted responses of forest
ecosystems. Environmental Pollution 244: 560-574.
- Haines, D. F., Aylward, J. A., Frey, S. D., Stinson, K. A. 2018. Regional Patterns of Floristic
Diversity and Composition in Forests Invaded by Garlic Mustard (Alliaria
petiolata). Northeastern Naturalist 25: 399-417.
- Harms, T. K., Groffman, P. M., Aluwihare, L., Craft, C., Wieder, W. R., Hobbie, S. E., Baer, S. G., Blair, J. M., Frey, S. D., Remucal, C. K., Rudgers, J. A., Collins, S. L. 2021. Patterns and trends of organic
matter processing and transport: Insights from the US long-term ecological
research network. Climate Change Ecology 2: article 100025, 12 pp.
- Heuck, C., Smolka, G., Whalen, E., Frey, S. D., Gundersen, P., Moldan, F., Fernandez, I. J., Spohn, M. 2018. Effects of long-term nitrogen
addition on phosphorus cycling in organic soil horizons of temperate
forests. Biogeochemistry 141: 167-181.
- Jones, J. A., Groffman, P. M., Blair, J., Davis, F. W., Dugan, H., Euskirchen, E. S., Frey, S. D., Harms, T. K., Hinckley, E., Kosmala, M., Loberg, S., Malone, S., Novick, K., Record, S., Rocha, A. V., Ruddell, B. L., Stanley, E. H., Sturtevant, C., Thorpe, A., White, T., Wieder, W. R., Zhai, L., Zhu, K. 2021. Synergies Among Environmental
Science Research and Monitoring Networks: A Research Agenda. Earth's Future 9: e2020EF001631, 17 pp.
- Kamble, P. N., Rousk, J., Frey, S. D., Baath, E. 2013. Bacterial growth and growth
limiting nutrients following chronic nitrogen additions to a hardwood forest
soil. Soil Biology and
Biochemistry 59: 32-37.
- Li, J., Wang, G., Mayes, M. A., Allison, S. D., Frey, S. D., Shi, Z., Hu, X., Luo, Y., Melillo, J. M. 2019. Reduced carbon use efficiency
and increased microbial turnover with soil warming. Global Change Biology 25: 900-910.
- Liu, X. A., Frey, S. D., Melillo, J. M., DeAngelis, K. M. 2021. Physical protection regulates
microbial thermal responses to chronic soil warming. Soil Biology and
Biochemistry 159: article 108298, 5 pp.
- Liu, X. A., Pold, G., Domeignoz-Horta, L.
A., Geyer, K. M., Caris, H., Nicholson, H., Kemner, K. M., Frey, S. D., Melillo, J. M., DeAngelis, K. M. 2021. Soil aggregate-mediated
microbial responses to long-term warming. Soil Biology and
Biochemistry 152: article 108055.
- Maynard, D. S., Covey, K. R., Crowther, T. W., Sokol, N. W., Morrison, E. W., Frey, S. D., Van Diepen, L. T. A., Bradford, M. A. 2018. Species associations overwhelm
abiotic conditions to dictate the structure and function of wood-decay
fungal communities. Ecology 99: 801-811.
- Melillo, J. M., Frey, S. D., DeAngelis, K. M., Werner, W. J., Bernard, M. J., Bowles, F. P., Pold, G., Knorr, M. A., Grandy, A. S. 2017. Long-term pattern and magnitude
of soil carbon feedback to the climate system in a warming world. Science 358: 101-105.
- Moore, J. A. M., Anthony, M. A., Pec, G. J., Trocha, L. K., Trzebny, A., Geyer, K. M., van Diepen, L. T. A., Frey, S. D. 2021. Fungal community structure and
function shifts with atmospheric nitrogen deposition. Global Change Biology 27: 1349-1364.
- Morrison, E. W., Frey, S. D., Sadowsky, J. J., van Diepen, L. T. A., Thomas, W. K., Pringle, A. 2016. Chronic nitrogen additions
fundamentally restructure the soil fungal community in a temperate
forest. Fungal Ecology 23: 48-57.
- Morrison, E. W., Pringle, A., Van Diepen, L. T. A., Frey, S. D. 2018. Simulated nitrogen deposition
favors stress-tolerant fungi with low potential for decomposition. Soil Biology and
Biochemistry 125: 75-85.
- Morrison, E. W., Pringle, A., Van Diepen, L. T. A., Grandy, A. S., Melillo, J. M., Frey, S. D. 2019. Warming alters fungal
communities and litter chemistry with implications for soil carbon
stocks. Soil Biology and
Biochemistry 132: 120-130.
- Morrison, E. W., Whitney, S. A., Geyer, K. M., Sevigny, J. L., Grandy, A. S., Thomas, W. K., DeAngelis, K. M., Frey, S. D. 2022. Evidence for a genetic basis in
functional trait tradeoffs with microbial growth rate but not growth
yield. Soil Biology and
Biochemistry 172: 108765.
- Pec, G. J., Van Diepen, L. T. A., Knorr, M., Grandy, A. S., Melillo, J. M., DeAngelis, K. M., Blanchard, J. L., Frey, S. D. 2021. Fungal community response to
long-term soil warming with potential implications for soil carbon
dynamics. Ecosphere 12: article e03460, 13 pp.
- Pisani, O., Frey, S. D., Simpson, A. J., Simpson, M. J. 2015. Soil warming and nitrogen
deposition alter soil organic matter composition at the
molecular-level. Biogeochemistry 123: 391-409.
- Pold, G., Billings, A. F., Blanchard, J. L., Burkhardt, D. B., Frey, S. D., Melillo, J. M., Schnabel, J., van Diepen, L. T. A., DeAngelis, K. M. 2016. Long-term warming alters
carbohydrate degradation potential in temperate forest soils. Applied and Environmental
Microbiology 82: 6518-6530.
- Pold, G., Domeignoz-Horta, L.
A., Morrison, E. W., Frey, S. D., Sistla, S. A., DeAngelis, K. M. 2020. Carbon Use Efficiency and Its
Temperature Sensitivity Covary in Soil Bacteria. mBio 11: e02293-19, 16 pp.
- Romero-Olivares, A.
L., Davie-Martin, C. L., Kramshøj, M., Rinnan, R., Frey, S. D. 2022. Soil volatile organic compound
emissions in response to soil warming and nitrogen deposition. Elementa: Science of the
Anthropocene 10: 00065.
- Rousk, J., Frey, S. D. 2015. Revisiting the hypothesis that
fungal-to-bacterial dominance characterises turnover of soil organic matter
and nutrients. Ecological Monographs 85: 457-472.
- Rousk, J., Frey, S. D., Baath, E. 2012. Temperature adaptation of
bacterial communities in experimentally warmed forest soils. Global Change Biology 18: 3252-3258.
- Savage, K., Parton, W. J., Davidson, E. A., Trumbore, S. E., Frey, S. D. 2013. Long-term changes in forest
carbon under temperature and nitrogen amendments in a temperate northern
hardwood forest. Global Change Biology 19: 2389-2400.
- Sierra, C. A., Trumbore, S. E., Davidson, E. A., Frey, S. D., Savage, K. E., Hopkins, F. M. 2012. Predicting decadal trends and
transient responses of radiocarbon storage and fluxes in a temperate forest
soil. Biogeosciences 9: 3013-3028.
- Sinsabaugh, R. L., Lauber, C. L., Weintraub, M. N., Ahmed, B., Allison, S. D., Crenshaw, C., Contosta, A. R., Cusack, D., Frey, S., Gallo, M. E., Gartner, T. B., Hobbie, S. E., Holland, K., Keeler, B. L., Powers, J. S., Stursova, C., Takacs-Vesbach, C., Waldrop, M., Wallenstein, M., Zak, D. R., Zeglin, L. H. 2008. Stoichiometry of soil enzyme
activity at global scale. Ecology Letters 11: 1252-1264.
- Smith, M. D., La Pierre, K. L., Collins, S. L., Knapp, A. K., Gross, K. L., Barrett, J. E., Frey, S. D., Gough, L., Miller, R. B., Morris, J. T., Rustad, L. E., Yarie, J. 2015. Global environmental change and
the nature of aboveground net primary productivity responses: Insights from
long-term experiments. Oecologia 177: 935-947.
- Stinson, K. A., Frey, S. D., Jackson, M. R., Coates-Connor, E., Anthony, M., Martinez*, K. 2018. Responses of non-native
earthworms to experimental eradication of garlic mustard and implications
for native vegetation. Ecosphere 9, article e02353: 11 pp.
- Stoica, I., Tabatabaei Anaraki,
M., Muratore, T., Knorr, M., Frey, S. D., Simpson, M. J. 2023. Chronic Warming and
Nitrogen-Addition Alter Soil Organic Matter Molecular Composition Distinctly
in Tandem Compared to Individual Stressors. ACS Earth and Space
Chemistry 7: 609-622.
- Tonitto, C., Goodale, C. G., Weiss, M. S., Frey, S. D., Ollinger, S. V. 2014. The effect of nitrogen addition
on soil organic matter dynamics: A model analysis of the Harvard Forest
Chronic Nitrogen Amendment experiment and soil carbon response to
anthropogenic N deposition. Biogeochemistry 117: 431-454.
- Van Diepen, L. T. A., Frey, S. D., Landis, E. A., Morrison, E. W., Pringle, A. 2017. Fungi exposed to chronic
nitrogen enrichment are less able to decay leaf litter. Ecology 98: 5-11.
- Van Diepen, L. T. A., Frey, S. D., Sthultz, C. M., Morrison, E. W., Minocha, R., Pringle, A. 2015. Changes in litter quality caused
by simulated nitrogen deposition reinforce the N-induced suppression of
litter decay. Ecosphere 6: art205.
- VandenEnden, L., Anthony, M. A., Frey, S. D., Simpson, M. J. 2021. Biogeochemical evolution of soil
organic matter composition after a decade of warming and nitrogen
addition. Biogeochemistry 156: 161-175.
- Whalen, E. D., Smith, R. G., Grandy, A. S., Frey, S. D. 2018. Manganese limitation as a
mechanism for reduced decomposition in soils under atmospheric nitrogen
deposition. Soil Biology and
Biochemistry 127: 252-263.
- Wheeler, J. A., Frey, S. D., Stinson, K. A. 2017. Tree seedling responses to
multiple environmental stresses: Interactive effects of soil warming,
nitrogen fertilization, and plant invasion. Forest Ecology and
Management 403: 44-51.
- Wieder, W. R., Pierson, D., Earl, S., Lajtha, K., Baer, S. G., Ballantyne, S., Berhe, A. A., Billings, S. A., Brigham, L. M., Chacon, S. S., Fraterrigo, J., Frey, S. D., Georgiou, K, de Graaff, M., Grandy, A. S., Hartman, M. D., Hobbie, S. E., Johnson, C., Kaye, J., Kyker-Snowman, E., Litvak, M. E., Mack, M. C., Malhotra, A., Moore, J. A. M., Nadelhoffer, K., Rasmussen, C., Silver, W. L., Sulman. B. N., Walker. X., Weintraub, S. 2021. SoDaH: the SOils DAta
Harmonization database, an open-source synthesis of soil data from research
networks, version 1.0. Earth System Science
Data 13: 1843–1854.
- Zabaloy, M. C., Frey, S. D., Lehman, R. M., Garland, J. L. 2008. Optimization and validation of
an oxygen-based approach for community-level physiological profiling of
soils. Soil Biology and
Biochemistry 40: 2960-2969.